needs to be upgraded as more than 10,000 users access it each day and its size has more than doubled over the past two years.
10) have been deposited in the GenBank (Mountain View, USA), EMBL (Heidelberg, Germany) and DDBJ
(Mishima, Japan) nucleotide sequence data bases under accession numbers AY620964 to AY620979, respectively.
Finally, we would like to urge the DDBJ
, EMBL-EBI, and NCBI to work together toward exchanging all MIAME-compliant microarray data.
98) have been deposited in the DDBJ
(Mishima, Japan), EMBL (Heidelberg, Germany) and GenBank (Mountain View, USA) nucleotide sequence data bases under accession numbers AY870662 to AY870684, respectively.
Phylogenetic relationships were determined from predicted T-RFs using the DDBJ
and RDP II databases (Cole et al.
We conducted BLASTN searches against dbEST and nr (the nonredundant set of GenBank, EMBL, and DDBJ
database sequences) to confirm the total gene specificity of the nucleotide sequences chosen for the primers and probes and the absence of DNA polymorphisms.
Databases accessible through GeneIndex include NCBI (National Center for Biotechnology Information) GeneBank, Human Genome, Mouse Genome, SAGEmap, UniGene, RefSeq, DbSNP, and HomoloGen; EBI (European Bioinformatics Institute) EMBL and TrEMBL; NLM (National Library of Medicine) Pub-Med; KEGG (Kyoto Encyclopedia of Genes and Genome) PATHWAY; DDBJ
(DNA Data Bank of Japan;); SIB (Swiss Institute of Bioinformatics); RCSB (Research Collaboratory for Structural Bioinformatics); LocusLink, SWISS-PROT, PROSITE, and Pfam.
LabBook has created BSML converters for many data sources, including GenBank, EMBL, Ensembl, OHGD, Swiss-Prot, and internal databases, with converters for DDBJ
and AGAVE in progress.
DNA sequences of the coding regions of bovine VEGF188 and VEGF120 were not found in public databases, and we deposited the nucleotide sequences in the DDBJ
, GenBank, and EMBL databases under Accession Nos.
databases (compiled from GenBank, EMBL, DDBJ
, SWISS-PROT, PIR, etc.
The obtained ZMLS/2011 sequence (15,298 bp) was deposited in the DDBJ
database (Gen Bank/EMBL/DDBJ
The accession numbers of DDBJ
for nucleotide sequences determined in this study are AB699244-AB699265.