Instead "cash for work" programmes in PAUP
actually attracted new rural dwellers into the capital - so PAUP
soon returned to its bloated self, and the next opportunity to 'decentralise', the stated aim of successive governments, will cost a whole lot more.
The ML analysis was performed by a heuristic search with TBR branch swapping and 100 random additions of taxa, performed in PAUP
The datasets for COI, COII and EF1a were combined based on the ILD test performed using PAUP
Maximum Parsimony (MP) and Maximum Likelihood (ML) analysis were performed with PAUP
A dendrogram was constructed using the neighbor-joining, maximum parsimony and maximum likelihood methods with PAUP
08 (Maddison & Maddison 2005) and analysed the matrix under the criterion of Maximum Parsimony using PAUP
Pairwise sequence divergences were calculated in PAUP
A phylogenetic tree was estimated using the neighbor-joining (NJ) method in PAUP
Results of a PAUP
* search using the ML criterion, with a necessarily reduced set of taxa, were consistent with those from the more extensive GARLI analysis (Fig.
6 (Posada & Crandall 1998) was run using the likelihood scores generated by PAUP
under the "longfmt=yes" option of the Lscores command to determine the preferred maximum likelihood model.
AFLPs from 40 individuals were coded as presence-absence data and analyzed in PAUP
The MP phylogenetic tree was generated by heuristic search routines with 1,000 random-addition sequences and TBR branch swapping using the software PAUP