PHRAPPhil's Revised Assembly Program (University of Washington Genome Center)
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com/stackpack) dentro de la cual se incluyen las otras herramientas de ensamble y agrupamiento como son PHRAP, d2 cluster y CRAW, respectivamente.
SNPTwist also allows users to leverage their past investments in bioinformatics tools by accepting output from industry standard alignment algorithms, such as DoubleTwist's Clustering and Alignment Tools (CAT) and PHRAP.