Bacteria 1 2 Staph, aureus CCUG1800 - 10.5 [+ or -] 0.7 3.5 [+ or -] 0.4 + 7.5 [+ or -] 0.7 0.0 [+ or -] 0.0 Staph, aureus (1094-7) - 9.5 [+ or -] 0.7 7.7 [+ or -] 0.4 + 8.5 [+ or -] 0.7 0.0 [+ or -] 0.0 * Staph, epi (CCUG
39508) - 10.5 [+ or -] 0.7 3.8 [+ or -] 5.3 + 8.0 [+ or -] 0.7 0.0 [+ or -] 0.0 E.
Bacteria group Affiliation Similarity (%) in AD Hydrolytic Polaribacter porphyrae 81 strain LNM-20 Arcobacter cryaerophilus 96 strain A169/B Sunxiuqinia faeciviva strain 77 JAM-BA0302 Flavobacterium 86 psychrophilum Acanthopleuribacter pedis 95 Microbulbifer donghaiensis 78 Alkanindiges illinoisensis 87 Gelidibacter algens 89 Acidogenic Roseateles terrae strain 98 CCUG
52222 Reichenbachiella agariperforans strain NBRC 80 16625 Acinetobacter johnsonii 99 strain Mannheim 3865/60 Maricaulis maris MCS10 83 strain MCS10 Acinetobacter sp.
Swings, "Genetic basis of tetracycline and minocycline resistance in potentially probiotic Lactobacillus plantarum strain CCUG
43738," Antimicrobial Agents and Chemotherapy, vol.
[48898.sup.T], and CV002 were prepared using Illumina DNA Sample Kit (Illumina, Inc., San Diego, CA, USA) according to manufacturer's recommendations.
schaalii strains, including reference strain CCUG 27420, were used for sequencing.
schaalii CCUG 27420 was used as a positive control and was included in each PCR.
cambriense type strain CCUG
[44998.sup.T] sequence as the best match (identities 98%-99%) (3).
The type strain AUST/NH1 has been deposited in the Collection of the World Health Organization Collaborative Center for Rickettsioses, Borrelioses and Tickborne Infections (CSUR), Marseille, France, under reference CSUR B1; in the Collection de l'Institut Pasteur (CIP) under reference CIP 108978T; and in the Culture Collection of the University of Goteborg (CCUG
), Sweden, under reference CCUG
perfringens strains NCTC 8239, ATCC 3626, CCUG
2037, and CCUG
44727 were used as positive controls.
9 Cecal tissue, broiler chicken Belgium CE I 2 Cecal tissue, broiler chicken CE I 3 Cecal tissue, broiler chicken CE I 4 Cecal tissue, broiler chicken CE I 5 Cecal tissue, broiler chicken CE I 6 Cecal tissue, broiler chicken CE I 7 Cecal tissue, broiler chicken CE I 8 Cecal tissue, broiler chicken CCUG
33837 NA Healthy broiler chicken Switzerland CCUG
33840 NA Laying hen, hepatitis Switzerland CCUG
33838 NA Stool, gastroenteritis and Switzerland hepatitis, human CCUG
33839 NA Stool, gastroenteritis, human Switzerland G 214 NA Stool, gastroenteritis, human Belgium (11) * AFLP, amplified fragment length polymorphism; CLO, Centrum voor Landbouwkundig Onderzoek; CCUG
, Culture Collection of the University of GSteborg, NA, not applicable or available.
pseudogenitalium type C-5 ATCC 33039 (CCUG
27540, sequence X81872) and a reference strain of CDC group F-1 (CDC G4330, sequence X81905) (Figure).
7414 USA - - CCUG
10781 USA - - CCUG
36925 USA - - CCUG
41923 Sweden - - CCUG
43518A Sweden - - CCUG
46981 Sweden - - CCUG
47340 UK - - B.