That is shared between the three large collaborating databases GenBank DDBJ
(DNA Data Bank of Japan) and EMBL (European Molecular Biology Laboratory) and remains same over the lifetime of the record.
Phylogenetic tree illustrated in Figure 2 inferred the degree of relatedness between 16S rDNA sequence of the isolate S9 with other closely related 16S rDNA sequences deposited in the international nucleotide sequences databases (e.g., GenBank, EMBL, DDBJ
Kodama et al., "DDBJ
read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data," DNA Research, vol.
New COI DNA sequences generated by this project were deposited in Genbank (67 accessions, numbers KJ469059-KJ469126), with the exception of specimens with only COI minibarcode sequence fragments , which were submitted to the DNA Databank of Japan (DDBJ
, 5 accessions AB935341-AB935345).
Annotations are allowed in most online biomedical databases like NCBI (http://www.ncbi.nlm.nih.gov/), UCSC Gene Browser (http://genome.ucsc.edu/), GDB (http://www.gdb.org/), DDBJ
(http://www.ddbj.nig.ac.jp/), and so forth.
Collaboration, which comprises the DNA Databank of Japan (DDBJ
Sequences of begomovirus DNA-A fragments were phylogenetically compared to those of other honeysuckle and tobacco begomoviruses (DDBJ
, GenBank and EMBL) using the multiple sequence alignment application of DNAMAN version 4.0 (Lynnon Biosoft, Quebec, Canada) full optimal sequence alignments and neighbor-joining method with 1000 bootstrap replications.
Exidiopsis calcea (AF291280) and Exidia truncata (AF291279) from the DNA database of Japan (DDBJ
) were used as outgroups.
This database is part of INSDC (International Nucleotide Sequence Database Collaboration (see: wwwinsdc.org), which is composed of the National Centre of Biotechnology Information (NCBI) in the United States, the DNA Database of Japan (DDBJ
) and EBI.
The 5 partial amoA gene sequences have been deposited in the database of DNA Data Bank of Japan (DDBJ
) under accession numbers AB360858-AB360862.
The overall goal of the PGSL project is to harvest and preserve nucleotide sequence data from the vast biodiversity throughout the continent and make a database, much like DDBJ
in Japan, EMBL in Europe, and GenBank in North America.
2002), and CIBEX (Center for Information Biology Gene Expression database) at DDBJ
(DNA Databank of Japan) (Ikeo et al.