FMRIB

Acronym	Definition
FMRIB	Functional Magnetic Resonance Imaging of the Brain

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The second-level analysis utilized FLAME (FMRIB's Local Analysis of Mixed Effects; Woolrich et al., 2004), a process that allows for estimation of mixed effects variance.

The Impact of Memory Retrieval on Deception and Truth Telling

Each FA image was normalized spatially to the target image with FMRIB's Nonlinear Image Registration Tool (FNIRT, part of FSL).

Plasma DNA Mediate Autonomic Dysfunctions and White Matter Injuries in Patients with Parkinson's Disease

Abbreviations BMI: Body mass index QST: Quantitative Sensory Testing IENFD: Intraepidermal nerve fiber density MRI: Magnetic resonance imaging EV: Epineurial volume FV: Fascicles volume NV: Nerve volume FNR: Fascicles to nerve volumes ratio CSA: Cross-sectional area SPGR: Spoiled gradient echo IDEAL: Iterative decomposition of water and fat with echo asymmetry and least-squares estimation FAST: FMRIB Automated Segmentation Tool.

MR Micro-Neurography and a Segmentation Protocol Applied to Diabetic Neuropathy

The FMRIB's linear image registration tool (FLIRT) [105] and FMRIB's nonlinear image registration tool (FNIRT) are excellent software that can accomplish this goal.

Pathological Brain Detection by Artificial Intelligence in Magnetic Resonance Imaging Scanning

Analysis for DTI was performed by the FMRIB Diffusion Toolbox from the FSL processing software package (http://www.fmrib.ox.ac.uk/fsl).

Specific White Matter Impairments in Patients with Treatment-Refractory First-Episode Schizophrenia: A 1-Year Follow-up Pilot Study

ASL data analysis and perfusion quantification were performed using a custom version of the BASIL toolbox from the FMRIB Software Library (http://www.fmrib.ox.ac.uk/fsl/BASIL).

Sensitivity of Multiphase Pseudocontinuous Arterial Spin Labelling (MP pCASL) Magnetic Resonance Imaging for Measuring Brain and Tumour Blood Flow in Mice

First, we analyzed the fMRI data acquired during the face processing task to compare between the emotional face condition and the control condition using the fMRI Expert Analysis Tool (FEAT) Version 6.0, which is part of FMRIB's Software Library (FSL, http://www.fmrib.ox.ac.uk/fsl) for extracting the ROIs in the gray matter associated with face processing.

Association between Scale-Free Brain Dynamics and Behavioral Performance: Functional MRI Study in Resting State and Face Processing Task

The CBF maps from each day and session were exported from the MRI scanner and processed using the FMRIB Software Library (FSL) [34, 35] on a 74-core Rocks Cluster Distribution (http://www.rocksclusters.org) high-performance computing system capable of running 120 threads in parallel (see Figure 1, e.g., CBF maps).

Repetitive Transcranial Electrical Stimulation Induces Quantified Changes in Resting Cerebral Perfusion Measured from Arterial Spin Labeling

Data were preprocessed using FMRIB's Software Library (v.

Altered Brain Functional Connectivity in Small-Cell Lung Cancer Patients after Chemotherapy Treatment: A Resting-State fMRI Study

Preprocessing was performed with Statistical Parametric Mapping software (SPM8, http://www.fil.ion.ucl.ac.uk/spm/software/spm8/), the Analysis of Functional NeuroImage (AFNI, http://afni.nimh.nih.gov/afni) package, and the FMRIB Software Library (FSL, http://fsl.fmrib.ox.ac.uk/fsl).

Aberrant Functional Connectivity Patterns of Default Mode Network May Play a Key Role in the Interaction between Auditory Verbal Hallucinations and Insight

Then FMRIB Software Library (FSL) by the Oxford Centre for Functional MRI of the Brain, and in particular its diffusion toolkit FDT, was used for the complete image processing pipeline; see Figure 1 for the overall flowchart:

Topological Measurements of DWI Tractography for Alzheimer's Disease Detection

Functional neuroimaging data analysis was carried out using FEAT (FMRI Expert Analysis Tool) Version 6, part of FSL (FMRIB's Software Library, http://www.fmrib.ox.ac.uk/fsl).

Laterality of Poststroke Cortical Motor Activity during Action Observation Is Related to Hemispheric Dominance