PCRELPine Cabin Run Ecological Laboratory (now Cacapon Institute; High View, WV; est. 1985)
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These pathways are converted into gene association networks where all types of pathway relationships (see Table 1), including gene-gene (PPrel, ECrel, and GErel), gene-compound (PCrel), and compound-compound, are used.
The PCrel, compound-compound, and others relationships are processed in different way.
KEGG relationships Description Gene relationships ECrel Enzyme-enzyme relation PPrel Protein-protein interaction GErel Gene expression interaction PCrel Protein-compound interaction Others compound-compound Compound-compound interaction TABLE 2: Most representative [Level.sub.2] results found using our method assessing some yeast cell cycle networks.