PHRED


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AcronymDefinition
PHREDPublic Health Research and Education Development (Canada)
PHREDPhil's Read Editor (University of Washington Genome Center)
PHREDPublic Health Risk Evaluation Data
PHREDPublic Health Review Evaluation Database
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References in periodicals archive ?
Phred. Version 0.020425c, online at http://phrap.org
Raw read summary Sample Total Reads Sequence Total %GC Average base (Paired-End) Length Data quality (bp) (Mb) (Phred score) GUT 381,074 151 114.32 50.76 35.95 Table 2.
Another example was with the PHRED program: the six separate PHRED units operated in relative isolation until it was recognized that the program's impact would be greater if collaboration and communication with stakeholders across sites increased.
The World Bank's Board of Executive Directors today approved a US$44 million guarantee under the Philippines Renewable Energy Project (PhRED) to help reduce risks of commercial lending to electric cooperatives.
Generated reads with phred scale score superior to 30 was mapped with BWA v0.7.5a program (Burrows-Wheeler Alignment Tool) using the reference genome M.
After the removal of ambiguous nucleotides, duplicates and low-quality sequences (Phred quality scores less than 20), a total of 63,367,046 cleaned reads (78%) were obtained.
The quality of the sequences was analyzed using Phred. Then, the contig was obtained using the CAP3 program "Sequence Assembly Program" <http:// pbil.univ-lyon1.fr/cap3.php> (HUANG et al., 1999).
Results were filtered by using a minimum Phred (http://www.1000genomes.org/node/101) quality score (scaled probability of SNP presence) of 300 and allele count of 2.